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Abstract Wildfire smoke covers entire continents, depositing aerosols and reducing solar radiation fluxes to millions of freshwater ecosystems, yet little is known about impacts on lakes. Here, we quantified trends in the spatial extent of smoke cover in California, USA, and assessed responses of gross primary production and ecosystem respiration to smoke in 10 lakes spanning a gradient in water clarity and nutrient concentrations. From 2006 − 2022, the maximum extent of medium or high-density smoke occurring between June-October increased by 300,000 km². In the three smokiest years (2018, 2020, 2021), lakes experienced 23 − 45 medium or high-density smoke days, characterized by 20% lower shortwave radiation fluxes and five-fold higher atmospheric fine particulate matter concentrations. Ecosystem respiration generally declined during smoke cover, especially in low-nutrient, cold lakes, whereas responses of primary production were more variable. Lake attributes and seasonal timing of wildfires will mediate the effects of smoke on lakes.